DBDP Code Repository

Check out our repository of high-quality end-to-end pipelines, benchmarks, and datasets for digital biomarker discovery!

Module Types

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MobGap
End-to-end
Feature Engineering
ML Algorithm
A Python implementation of the Mobilise-D algorithm pipeline for gait analysis using IMU worn at the lower back
FOMO
Visualization
Feature Engineering
Functions for Optimizing Missing Observations (FOMO) is a Python module to help you better understand missingness in your data.
Signal Alignment
Preprocessing
An improved Dynamic Time Warping algorithm for aligning biomedical signals of nonuniform sampling frequencies.
Heart Rate Variability
Feature Engineering
Calculates time and frequency domain heart rate variability metrics from RR interval (ECG) or IBI (PPG).
CovIdentify
End-to-end
ML Algorithm
Functions to extract features from wearable data to track and predict infectious disease status.
Exploratory Data Analysis
Visualization
Tools for exploratory data analysis of wearables and mHealth data.
FLIRT
Feature Engineering
Preprocessing
Feature generation tooLkIt for weaRable daTa such as that from your smartwatch or smart ring.
cgmquantify
Feature Engineering
Functions to calculate glucose summary metrics, glucose variability metrics.
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